Phylogenetic tree instability after taxon addition: empirical frequency, predictability, and consequences for online inference
Lena Collienne, Mary Barker, Marc A Suchard, and Frederick “Erick” A Matsen
Systematic Biology 2024
Ranked Subtree Prune and Regraft
Lena Collienne, Chris Whidden, and Alex Gavryushkin
Bulletin of Mathematical Biology 2024
Estimating the mean in the space of ranked phylogenetic trees
Lars Berling, Lena Collienne, and Alex Gavryushkin
Bioinformatics 2024
Online Bayesian Analysis with BEAST 2
Remco Bouckaert, Lena Collienne, and Alex Gavryushkin
bioRxiv 2022
Spaces of phylogenetic time trees
Lena Collienne
PhD thesis, University of Otago
Discrete coalescent trees
Lena Collienne, Kieran Elmes, Mareike Fischer, David Bryant, and Alex Gavryushkin
Journal of Mathematical Biology 2021
Computing nearest neighbour interchange distances between ranked phylogenetic trees
Lena Collienne and Alex Gavryushkin
Journal of Mathematical Biology, 82(8), 2021
Geometry of Ranked Nearest Neighbour Interchange Space of Phylogenetic Trees
Lena Collienne, Kieran Elmes, Mareike Fischer, David Bryant, and Alex Gavryushkin
bioRxiv 2019