2023
Ranked Subtree Prune and Regraft
Lena Collienne, Chris Whidden, and Alex Gavryushkin
bioRxiv 2023
Estimating the mean in the space of ranked phylogenetic trees
Lars Berling, Lena Collienne, and Alex Gavryushkin
bioRxiv 2023
2022
Online Bayesian Analysis with BEAST 2
Remco Bouckaert, Lena Collienne, and Alex Gavryushkin
bioRxiv 2022
2021
Spaces of phylogenetic time trees
Lena Collienne
PhD thesis, University of Otago
Discrete coalescent trees
Lena Collienne, Kieran Elmes, Mareike Fischer, David Bryant, and Alex Gavryushkin
Journal of Mathematical Biology 2021
Computing nearest neighbour interchange distances between ranked phylogenetic trees
Lena Collienne and Alex Gavryushkin
Journal of Mathematical Biology, 82(8), 2021
2019
Geometry of Ranked Nearest Neighbour Interchange Space of Phylogenetic Trees
Lena Collienne, Kieran Elmes, Mareike Fischer, David Bryant, and Alex Gavryushkin
bioRxiv 2019